Smicha
Thanks for the recommendations, I didn't know about PLX chips. Though I am going to try out the P9 X79 E-WS, which does have 2 PLX chips only because I don't feel like buying a new CPU if I can help it. Also the GPU Cluster ships tomorrow, but I don't know how fast it will arrive. Fingers are crossed that I'll get it this weekend, but most likely will be next week. Canada to the States.
Notiusweb
Thanks and I was originally planning on using the 1st PCIE lane for the display card. Because I have 6 PCIE lanes and the separation between lanes 1 and 2 are big enough to fit a dual slot card, though that won't be the case with the new board. I currently have the P9 X79 WS so I'm getting the step up from that and new so hopefully I can at least get all 6 GPUs up and running with little trouble. The new board should come this weekend so I'll update once I'm able.
I will attempt your suggestion, but on the current board I was only able to get those 5 GPUs to work once. I tried it again this last weekend and it didn't decide to want to work with me. So that is what lead me to do that single riser test. My thinking is since each lane is not working with a single riser/ single GPU connected to it (except lane 1) Then I can think of 2 problems.
1. Since the riser works with lane 1, but can't with the others. The amount of bandwidth is to low to lanes 2-6 and can not function properly with the 1x USB 3.0 riser.
2. the amount of bandwidth in the riser needs to be bigger 4x, 8x, 16x in order for the lanes to accept it.
These are complete guesses, so I could be completely wrong. Is there a way to manually set bandwidth on the PCIE lanes? I know that the CPU decides bandwidth automatically, but I was thinking if you set it to x1,x4,x8,x16 manually it would take out the guess work for the CPU and make things more fluid. Though I'm just making guesses here. What really bothers me is that 4 GPUs directly connected doesn't working anymore, because last time I got 4 980 ti's to work no problem. I just plugged them in and that was it. Which also leads me to believe the bandwidth priority of this Motherboard is screwed up.
I'll update once the new board arrives and I have the time to install it to see if I have the same issues, hopefully I don't.
Also as to you waiting on the response from your BIOS manufacture do you mean the Motherboard manufacture or is there a different company that makes BIOS? When I went to contact ASUS about maximum GPU load they kept on saying 4 only. No matter how I phrased the question they kept telling me 4 only on all their Motherboards. It was over chat support so I don't know how to hold his credibility/ knowledge on the subject. I might of gotten a bad person maybe, but since what we are doing is breaking/ bending rules I don't know that your average technical support will know the details and just read what is off the box. Perhaps if I explained the situation to the person better we would've gotten somewhere, but that is something to try a later day. You'll just have to keep calling until you get someone that knows what you are talking about. This is assuming that you're talking about the Motherboard manufacture. If you are not then those people most likely are well versed... hopefully.